Microbial Bioactives
Microbial Bioactives | Online ISSN 2209-2161
279
Citations
174.8k
Views
157
Articles
REVIEWS (Open Access)
Unlocking the Potential of Fungi and Their Metabolites for Sustainable Agriculture, Nutrition, and Health.
Ronglian Xing 1, Yini Zhang 2, Yu Sun 2*
Microbial Bioactives 9 (1) 1-8 https://doi.org/10.25163/microbbioacts.9110611
Submitted: 27 October 2025 Revised: 14 January 2026 Accepted: 21 January 2026 Published: 23 January 2026
Abstract
Fungi are often described as silent architects of ecosystems, yet their broader ecological and biotechnological significance remains underappreciated. This systematic review and meta-analysis synthesize current evidence on fungal diversity, ecological function, and metabolite production across agricultural, environmental, and extreme ecosystems. Following PRISMA 2020 guidelines, included studies were quantitatively and qualitatively analyzed to evaluate species richness, enzyme activity, metabolite yield, and plant growth–promoting effects. The pooled analyses revealed substantial ecological variation in fungal diversity, with nutrient-rich systems such as compost and agricultural soils consistently demonstrating higher species richness and functional outputs than extreme habitats. Filamentous fungi, particularly Aspergillus and Trichoderma, showed significantly greater extracellular enzyme activity, while edible and medicinal fungi were enriched in bioactive polysaccharides and antioxidant metabolites. A strong positive correlation (r = 0.72, p < 0.001) was observed between species richness and metabolite yield, suggesting that biodiversity directly influences functional potential. Although heterogeneity was present due to methodological and ecological variability, random-effects modeling confirmed the robustness of pooled estimates. Evidence also supports fungal applications in biofertilization, heavy-metal mitigation, functional food development, enzyme production, and biopharmaceutical discovery. Collectively, the findings position fungi not merely as decomposers or fermentation agents, but as multifunctional biological resources central to sustainable agriculture, nutrition, and biotechnology. Preserving fungal biodiversity and integrating it into circular bioeconomy frameworks may be essential for addressing global food security and environmental resilience challenges.
Keywords: fungal diversity; bioactive metabolites; plant growth-promoting fungi; mycorrhizae; sustainable agriculture; functional foods; meta-analysis
References
AbdElgawad, H., Abuelsoud, W., Madany, M. M. Y., Selim, S., Zinta, G., Mousa, A. S. M., & Hozzein, W. N. (2020). Actinomycetes enrich soil rhizosphere and improve seed quality as well as productivity of legumes by boosting nitrogen availability and metabolism. Biomolecules, 10(12), 1675. https://doi.org/10.3390/biom10121675
Aguilar-Paredes, A., Valdés, G., Araneda, N., Valdebenito, E., Hansen, F., & Nuti, M. (2023). Microbial community in the composting process and its positive impact on the soil biota in sustainable agriculture. Agronomy, 13(2), 542. https://doi.org/10.3390/agronomy13020542
Aguilar-Paredes, A., Valdés, G., Araneda, N., Valdebenito, E., Hansen, F., & Nuti, M. (2023). Microbial community in the composting process and its positive impact on the soil biota in sustainable agriculture. Agronomy, 13(2), 542. https://doi.org/10.3390/agronomy13020542
Almeida, L. C. O., Santos, H. L., Nogueira, C. H. D. C., Carnietto, M. R. A., Silva, G. F. D., Boaro, C. S. F., & Silva, M. D. A. (2024). Plant growth-promoting bacteria enhance survival, growth, and nutritional content of sugarcane propagated through pre-sprouted seedlings under water deficit. Agriculture, 14(2), 189. https://doi.org/10.3390/agriculture14020189
Asfour, H. Z., Awan, Z. A., Bagalagel, A. A., Elfaky, M. A., Abdelhameed, R. F. A., & Elhady, S. S. (2019). Large-scale production of bioactive terrein by Aspergillus terreus strain s020 isolated from the Saudi Coast of the Red Sea. Biomolecules, 9(10), 480. https://doi.org/10.3390/biom9090480
Barbosa, R. N., Felipe, M. T. C., Silva, L. F., Silva, E. A., Silva, S. A., Herculano, P. N., Prazeres, J. F. S. A., Lima, J. M. S., Bezerra, J. D. P., Moreira, K. A., Magalhães, O. M. C., & Souza-Motta, C. M. (2025). A review of the biotechnological potential of cave fungi: A toolbox for the future. Journal of Fungi, 11(2), 145. https://doi.org/10.3390/jof11020145
Bezerra, V. H. S., Cardoso, S. L., Fonseca-Bazzo, Y., Silveira, D., Magalhães, P. O., & Souza, P. M. (2021). Protease produced by endophytic fungi: A systematic review. Molecules, 26(22), 7062. https://doi.org/10.3390/molecules26227062
Borenstein, M., Hedges, L. V., Higgins, J. P. T., & Rothstein, H. R. (2009). Introduction to meta-analysis. Wiley. https://doi.org/10.1002/9780470743386
Bortolot, M., Buffoni, B., Mazzarino, S., Hoff, G., Martino, E., Fiorilli, V., & Salvioli Di Fossalunga, A. (2024). The importance of mycorrhizal fungi and their associated bacteria in promoting crops' performance: An applicative perspective. Horticulturae, 10(12), 1326. https://doi.org/10.3390/horticulturae10121326
Canonica, L., Pesenti, M., Araniti, F., Sørensen, J. L., Muff, J., Cecchi, G., Di Piazza, S., Nocito, F. F., & Zotti, M. (2025). Native fungi as a nature-based solution to mitigate toxic metal(loid) accumulation in rice. Microorganisms, 13(7), 1667. https://doi.org/10.3390/microorganisms13071667
Chapla, V. M., Honório, A. E., Gubiani, J. R., Vilela, A. F. L., Young, M. C. M., Cardoso, C. L., Pavan, F. R., Cicarelli, R. M., Ferreira, P. M. P., & Bolzani, V. S. (2020). Acetylcholinesterase inhibition and antifungal activity of cyclohexanoids from the endophytic fungus Saccharicola sp. Phytochemistry Letters, 39, 116–123. https://doi.org/10.1016/j.phytol.2020.07.016
Chowdhury, N. S., Sohrab, M. H., Rana, M. S., Hasan, C. M., Jamshidi, S., & Rahman, K. M. (2017). Cytotoxic naphthoquinone and azaanthraquinone derivatives from an endophytic Fusarium solani. Journal of Natural Products, 80(4), 1173–1177. https://doi.org/10.1021/acs.jnatprod.6b00610
Ciobanu, L. T., Bînzari, V., Dima, S.-O., Farca?anu, I. C., Oancea, F., & Constantinescu-Aruxandei, D. (2024). The clothes matter—Exploiting agronomical functions of trichogenic selenium nanoparticles sharing activities with biological systems wherein (were) formed. Agronomy, 14(1), 190. https://doi.org/10.3390/agronomy14010190
Derbyshire, E. (2022). Fungal-derived mycoprotein and health across the lifespan: A narrative review. Journal of Fungi, 8(6), 653. https://doi.org/10.3390/jof8070653
DerSimonian, R., & Laird, N. (1986). Meta-analysis in clinical trials. Controlled Clinical Trials, 7(3), 177–188. https://doi.org/10.1016/0197-2456(86)90046-2
Dufossé, L. (2024). Fungi and fungal metabolites for the improvement of human and animal life, nutrition, and health. Journal of Fungi, 10(12), 863. https://doi.org/10.3390/jof10120863
Dufossé, L., Fouillaud, M., & Caro, Y. (2021). Fungi and fungal metabolites for the improvement of human and animal nutrition and health. Journal of Fungi, 7(4), 274. https://doi.org/10.3390/jof7040274
Egger, M., Davey Smith, G., Schneider, M., & Minder, C. (1997). Bias in meta-analysis detected by a simple, graphical test. BMJ, 315(7109), 629–634. https://doi.org/10.1136/bmj.315.7109.629
Eroshin, V. K., & Dedyukhina, E. G. (2002). Effect of lipids from Mortierella hygrophila on plant resistance to phytopathogens. World Journal of Microbiology & Biotechnology, 18, 165–167. https://doi.org/10.1023/A:1014429527591
Fadiji, A. E., Lanrewaju, A. A., Omomowo, I. O., Parra-Cota, F. I., & de los Santos-Villalobos, S. (2025). Harnessing seed endophytic microbiomes: A hidden treasure for enhancing sustainable agriculture. Plants, 14(15), 2421. https://doi.org/10.3390/plants14152421
Hernández-Fernández, M., Cordero-Bueso, G., Ruiz-Muñoz, M., & Cantoral, J. M. (2021). Culturable yeasts as biofertilizers and biopesticides for a sustainable agriculture: A comprehensive review. Plants, 10(5), 822. https://doi.org/10.3390/plants10050822
Higgins, J. P. T., Thomas, J., Chandler, J., Cumpston, M., Li, T., Page, M. J., & Welch, V. A. (2022). Cochrane handbook for systematic reviews of interventions (Version 6.3). Cochrane. http://www.training.cochrane.org/handbook
Higgins, J. P. T., Thompson, S. G., Deeks, J. J., & Altman, D. G. (2003). Measuring inconsistency in meta-analyses. BMJ, 327(7414), 557–560. https://doi.org/10.1136/bmj.327.7414.557
Kuzniar, A., Kruczynska, A., Wlodarczyk, K., Vangronsveld, J., & Wolinska, A. (2025). Endophytes as permanent or temporal inhabitants of different ecological niches in sustainable agriculture. Applied Sciences, 15(3), 1253. https://doi.org/10.3390/app15031253
Lin, L., & Xu, J. (2020). Fungal pigments and their roles associated with human health. Journal of Fungi, 6(4), 280. https://doi.org/10.3390/jof6040280
Malik, A. I., Sophearith, S., Delaquis, E., Cuellar, W. J., Jimenez, J., & Newby, J. C. (2022). Susceptibility of cassava varieties to disease caused by Sri Lankan cassava mosaic virus and impacts on yield by use of asymptomatic and virus-free planting material. Agronomy, 12(7), 1658. https://doi.org/10.3390/agronomy12071658
Ozimek, E., & Hanaka, A. (2021). Mortierella species as the plant growth-promoting fungi present in agricultural soils. Agriculture, 11(1), 7. https://doi.org/10.3390/agriculture11010007
Page, M. J., McKenzie, J. E., Bossuyt, P. M., Boutron, I., Hoffmann, T. C., Mulrow, C. D., et al. (2021). The PRISMA 2020 statement: An updated guideline for reporting systematic reviews. BMJ, 372, n71. https://doi.org/10.1136/bmj.n71
Ren, F., Zhu, S., Wang, B., Li, L., Liu, X., Su, R., & Che, Y. (2016). Hypocriols A–F, heterodimeric botryane ethers from Hypocrea sp., an insect-associated fungus. Journal of Natural Products, 79(7), 1848–1856. https://doi.org/10.1021/acs.jnatprod.6b00394
Slaný, O., Klempová, T., Shapaval, V., Zimmermann, B., Kohler, A., & Certík, M. (2020). Biotransformation of animal fat by-products into ARA-enriched fermented bioproducts by solid-state fermentation of Mortierella alpina. Journal of Fungi, 6(4), 236. https://doi.org/10.3390/jof6040236
Takahashi, J. A., Barbosa, B. V. R., Martins, B. A., Guirlanda, C. P., & Moura, M. A. F. (2020). Use of the versatility of fungal metabolism to meet modern demands for healthy aging, functional foods, and sustainability. Journal of Fungi, 6(4), 223. https://doi.org/10.3390/jof6040223
Tavares, D. G., Barbosa, B. V. L., Ferreira, R. L., Duarte, W. F., & Cardoso, P. G. (2018). Antioxidant activity and phenolic compounds of the extract from pigment-producing fungi isolated from Brazilian caves. Biocatalysis and agricultural biotechnology, 16, 148-154. https://doi.org/10.1016/j.bcab.2018.07.031
Verardi, A., Sangiorgio, P., Della Mura, B., Moliterni, S., Spagnoletta, A., Dimatteo, S., ... & Errico, S. (2025). Tenebrio molitor frass: A cutting-edge biofertilizer for sustainable agriculture and advanced adsorbent precursor for environmental remediation. Agronomy, 15(3), 758. https://doi.org/10.3390/agronomy15030758
Vincze, É.-B., Becze, A., Laslo, É., & Mara, G. (2024). Beneficial soil microbiomes and their potential role in plant growth and soil fertility. Agriculture, 14(1), 152. https://doi.org/10.3390/agriculture14010152
Wang, A., Zhao, S., Gu, G., Xu, D., Zhang, X., Lai, D., & Zhou, L. (2020). Rhizovagine A, an unusual dibenzo-α-pyrone alkaloid from the endophytic fungus Rhizopycnis vagum nitaf 22. RSC Advances, 10(46), 27894–27898. https://doi.org/10.1039/D0RA05022A
Wu, B., Hussain, M., Zhang, W., Stadler, M., Liu, X., & Xiang, M. (2019). Current insights into fungal species diversity and perspective on naming the environmental DNA sequences of fungi. Mycology, 10(3), 127-140. https://doi.org/10.1080/21501203.2019.1614106
Ye, Y., Qu, J., Pu, Y., Rao, S., Xu, F., & Wu, C. (2020). Selenium biofortification of crop food by beneficial microorganisms. Journal of Fungi, 6(2), 59. https://doi.org/10.3390/jof6020059
Zeeshan Ul Haq, M., Yu, J., Yao, G., Yang, H., Iqbal, H. A., Tahir, H., Cui, H., Liu, Y., & Wu, Y. (2023). A systematic review on the continuous cropping obstacles and control strategies in medicinal plants. International Journal of Molecular Sciences, 24(15), 12470. https://doi.org/10.3390/ijms241512470
Zhang, J., Li, X., Pei, P., Wang, P., Guo, Q., Yang, H., & Xue, X. (2025). Multistrain microbial inoculant enhances yield and medicinal quality of Glycyrrhiza uralensis in arid saline-alkali soil and modulates root nutrients and microbial diversity. Agronomy, 15(8), 1879. https://doi.org/10.3390/agronomy15081879
Zhang, J., Liu, S. S., Yuan, W. Y., Wei, J. J., Zhao, Y. X., & Luo, D. Q. (2017). Carotane-type sesquiterpenes from cultures of the insect pathogenic fungus Isaria fumosorosea. Journal of Asian Natural Products Research, 21(1), 1–7. https://doi.org/10.1080/10286020.2017.1410143
Zhao, S., Gao, Q., Rong, C., Wang, S., Zhao, Z., Liu, Y., & Xu, J. (2020). Immunomodulatory effects of edible and medicinal mushrooms and their bioactive immunoregulatory products. Journal of Fungi, 6(4), 269. https://doi.org/10.3390/jof6040269
Zucconi, L., Canini, F., Temporiti, M. E., & Tosi, S. (2020). Extracellular enzymes and bioactive compounds from Antarctic terrestrial fungi for bioprospecting. International Journal of Environmental Research and Public Health, 17(18), 6459. https://doi.org/10.3390/ijerph17186459
Recommended articles
Illuminating Biological Dark Matter: Integrating Metagenomics, Synthetic Biology, and AI to Unlock Microbial and Genomic Potential for Therapeutics and Biotechnology
Exploring the Frontiers of Cyanobacteria and Microalgae: Integrating Emerging Technologies for Biodiversity Discovery, Metabolic Insights, and Environmental Response
Microalgae and Cyanobacteria as Photosynthetic Microbial Factories: Taxonomy, Biochemical Potential, and Emerging Bioindustrial Applications
Article metrics
View details
0
Downloads
0
Citations
28
Views
0
Save
Save
0
Citation
Citation
28
View
View
0
Share
Share