PERSPECTIVE   (Open Access)

Metabolic similarity of plant and human: implications for efficacy and regulatory compliance of herbal therapies

Md Shamsuddin Sultan Khan A*, Christopher Ian Cazzonelli B, Hiroyuki Kurata C, Md Bahadur Badsha D, Chun Guang Li E, Gerald Muench E, Amin Malik Shah Abdul Majid A*

+ Author Affiliations

Australian Herbal Insight 2(1) 028-037 https://doi.org/10.25163/ahi.2046

Submitted: 28 December 2018  Revised: 29 April 2019  Published: 18 May 2019 

A combination of a both systems and structural based approaches can generate new models that render a better metabolite composition bioactivity reduction, thereby enhancing the efficacy, safety, and toxicity of herbal medicine processing. 

Abstract

Forecasting what biological effects an active metabolite compartmentalized in a medicinal plant may have on human health requires intensive research and clinical trials. There are inconsistencies in the application of herbal medicine in the treatment of disease mostly due to the metabolic composition. Different herbal strains, growing media and environmental conditions will alter the metabolite composition of herbal extracts. A modeling approach to identify the genes, enzymes and signaling pathways involved in the biosynthesis of the medicinal plant metabolites could harmonize the process of predicting the metabolite composition. The structural similarity of primary and secondary plant herbal metabolites does not always provide complete assurance of what pharmacological effect they may have on the respective human metabolic system. Many of the medicinal plant metabolites are either unknown or not searchable through current computational resources. In this review, we have discussed that a system based biological approach comparing human and plant metabolic signaling networks that could be additionally productive to ascertain the regulatory and biological processes conferred by a metabolite and their bioactivity pathways in living systems. A combination of a both systems and structural based approaches can generate new models that render a better metabolite composition bioactivity reduction, thereby enhancing the efficacy, safety, and toxicity of herbal medicine processing. 

Key Words: System Pharmacology, Herbal medicine, Bioactivity, Safety, Efficacy, Toxicology

References

Agren, R Mardinoglu A, Asplund A, Kampf C, Uhlen M, and Nielsen J (2014). Mol Syst Biol 10: 721.
https://doi.org/10.1002/msb.145122
PMid:24646661 PMCid:PMC4017677
 
Badsha MB, Kurata H, Onitsuka M, Oga T, Omasa T. (2016). Metabolic analysis of antibody producing Chinese hamster ovary cell culture under different stresses conditions. J Biosci Bioeng 122(1): 117-124.
https://doi.org/10.1016/j.jbiosc.2015.12.013
PMid:26803706
 
Basheer Mohamed Khadeer Ahamed, Aisha Abdalrahim F A, Nassar Zeyad D, Siddiqui Jamshed M, Ismail Z, Omari SMS, Parish CR & Abdul Majid A M S (2012). Cat's Whiskers Tea (Orthosiphon Stamineus) Extract Inhibits Growth ofcolon Tumor in Nude Mice and Angiogenesis in Endothelial Cells via Suppressing VEGFR Phosphorylation. Nutrition and Cancer, 64(1): 89-99
https://doi.org/10.1080/01635581.2012.630160
PMid:22136553
 
Becker S, Feist AM, Mo ML, Hannum G, Palsson BO, Herrgard MJ. (2007). Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox. Nature Protocols 2: 727-738.
https://doi.org/10.1038/nprot.2007.99
PMid:17406635
 
Bees and toxic chemicals, From Wikipedia, the free encyclopedia, accessed on 26 November 2016, at 02:30 pm.
 
Dénarié, J.; Debelle, F.; Promé, J.C. (1996) Rhizobium lipochitooligosaccharide nodulation factors: Signalling molecules mediating recognition and morphogenesis. Annu. Rev. Biochem. 1996; 65: 503-535.
https://doi.org/10.1146/annurev.bi.65.070196.002443
PMid:8811188
 
E-mail communication from Dr. Meng Chen to M. Sue Benford, Dec. 15, 2000 (on file).
 
Evans K, Keller C, Pavur K, Glasgow K, Conn B, Lauring B (2006). Interaction of two hereditary spastic paraplegia gene products spastin and atlastin, suggests a common pathway for ayonal maintenance. Proc Natl Acad Sci USA 103: 10666-71.
https://doi.org/10.1073/pnas.0510863103
PMid:16815977 PMCid:PMC1502289
 
Gurwitsch AG, Grabje S, and Salkind S. (1923). The nature of the specific pathogen of cell division, Arch Entw Mech, 100 (11).
https://doi.org/10.1007/BF02111053
 
Hebar A, Valent P and Selzer (2013). The impact of molecular targets in cancer drug development: major hurdles and future strategies. E. Expert Rev Clin Pharmacol 6: 23-34.
https://doi.org/10.1586/ecp.12.71
PMid:23272790
 
Hermann, Janice R. "Protein and the Body". Oklahoma Cooperative Extension Service, Division of Agricultural Sciences and Natural Resources. Oklahoma State University: T-3163-1 - T-3163-4. Http://pods.dasnr.okstate.edu/docushare/dsweb/Get/Document-2473/T-3163web.pdf
 
Http://wf1-ext-vip.niehs.nih.gov/evals/genistein-soy/genistein/Genistein_Report_final.pdf
 
Hu J, Shibata Y, Zhu P-P, Voss C, Rismanchi N, Prinz W, et al. (2009). A class of dynamin-like gtpases involved in the generation of the tubular ER network. Cell 138: 549-61.
https://doi.org/10.1016/j.cell.2009.05.025
PMid:19665976 PMCid:PMC2746359
 
Hughes CL (1998). Phytochemical Mimicry of Reproductive Hormones and Modulation of Herbivore Frertility by Phytoestrogens. Environ Health Perspect 78: 171-174.
https://doi.org/10.1289/ehp.8878171
PMid:3203635 PMCid:PMC1474615
 
Hyun Uk Kim, Jae Yong Ryu, Jong Ok Lee and Sang Yup Lee. (2015). A systems approach to traditional oriental Medicine. Nature biotechnology 33(3): 264-268.
https://doi.org/10.1038/nbt.3167
PMid:25748918
 
Indrasumunar A., Searle I., Lin M.H., Kereszt A., Men A., Carroll B.J., Gresshoff, P.M. (2011). Limitation of nodule organ number by a nodulation factor receptor kinase in soybean (Glycine max L. Merr.). Plant J. 65: 39-50.
https://doi.org/10.1111/j.1365-313X.2010.04398.x
PMid:21175888
 
Indrasumunar, A.; Kereszt, A.; Searle, I.; Miyagi, M.; Li, D., Nguyen CD, et al. (2009). Inactivation of duplicated Nod-Factor Receptor 5 (NFR5) genes in recessive loss-of-function non-nodulation mutants of allotetraploid soybean (Glycine max L. Merr.). Plant Cell Physiol.
https://doi.org/10.1093/pcp/pcp178
PMid:20007291
 
Kanti Bhooshan Pandey and Syed Ibrahim Rizvi. (2009). Plant polyphenols as dietary antioxidants in human health and disease, Oxid Med Cell Longev. 2(5): 270-278.
https://doi.org/10.4161/oxim.2.5.9498
PMid:20716914 PMCid:PMC2835915
 
Klamt S, Rodriguez JS, Gilles ED. (2007). Structural and functional analysis of cellular networks with cellnetanalyzer. BMC Syst. Biol. 1: 2.
https://doi.org/10.1186/1752-0509-1-2
PMid:17408509 PMCid:PMC1847467
 
Lee M, Paik SK, Lee M-J, Kim Y-J, Kim S, Nahm M, et al. (2009). Drosophila Atlastin regulates the stability of muscle microtubules and is required for synapse development. Dev Biol 330:250-62.
https://doi.org/10.1016/j.ydbio.2009.03.019
PMid:19341724
 
Lee Y, Paik D, Bang S, Kang J, Chun B, Lee S, et al. (2008). Loss of spastic paraplegia gene atlastin induces age-dependent death of dopaminergic neurons in Drosophila. Neurobiol Aging 29: 84-94.
https://doi.org/10.1016/j.neurobiolaging.2006.09.004
PMid:17030474
 
Li J, Nagpal P, Vitart V, mcmorris TC, Chory J. (1996). Arole for brassinosteroids in light-dependent development of Arabidopsis. Science 272: 398-401.
https://doi.org/10.1126/science.272.5260.398
PMid:8602526
 
Li J, Nagpal P, Vitart V, mcmorris TC, Chory J. Arole for brassinosteroids in light-dependent development of Arabidopsis. Science 1996; 272: 398-401.
https://doi.org/10.1126/science.272.5260.398
PMid:8602526
 
Li J, Zhu S, Song X, Shen Y, Chen H, Yu J, et al. (2006). A rice glutamate receptor-like gene is critical for the division and survival of individual cells in the root apical meristem. Plant Cell 18: 340-9.
https://doi.org/10.1105/tpc.105.037713
PMid:16377757 PMCid:PMC1356543
 
Limpens E, Franken C, Smit P, Willemse J, Bisseling T, Geurts R (2003). Lysm domain receptor kinases regulating rhizobial nod factor-induced infection. Science 302: 630-633.
https://doi.org/10.1126/science.1090074
PMid:12947035
 
Luckey TD (1980). Radiogenic Metabolism, Am J. Clin. Nutr, 33:2544.
https://doi.org/10.1093/ajcn/33.11.2544
 
Madsen EB, Madsen LH, Radutoiu S, Olbryt M, Rakwalska M, Szczyglowski K, et al. (2003). A receptor kinase gene of the lysm type is involved in legume perception of rhizobial signals. Nature 425: 637-640.
https://doi.org/10.1038/nature02045
PMid:14534591
 
Mara Grunbaum, Gee Whiz (2010). Human Urine Is Shown to Be an Effective Agricultural Fertilizer. Scientific American accessed on 26/11/2016 3.08 pm.
 
Natural vs. Man-Made Chemicals - Dispelling Misconceptions. Www.chemcompound.com accessed on 23/11/2016 08:37:41 GMT
 
Nortier JL, Martinez MC, Schmeiser HH, Arlt VM, Bieler CA, Petein M, et al. (2000). Urothelial carcinoma associated with the use of a Chinese herb (Aristolochia fangchi). N Engl J Med. 342: 1686-92.
https://doi.org/10.1056/NEJM200006083422301
PMid:10841870
 
NTP-CERHR Expert Panel Report on the Reproductive and Developmental Toxicity of Genistein. US DHHS, National Toxicology Program. (2006).
 
Radutoiu S, Madsen LH, Madsen EB, Felle HH, Umehara Y, Gronlund M, et al. (2003). Plant recognition of symbiotic bacteria requires two lysm receptor-like kinases. Nature 425: 585-592.
https://doi.org/10.1038/nature02039
PMid:14534578
 
Redmond JW, Batley M, Djordjevic MA, Innes RW, Kuempel PL, Rolfe BG (1986). Flavones induce expression of nodulation genes in Rhizobium. Nature 323: 632-635.
https://doi.org/10.1038/323632a0
 
Sarkar FH, Adsule S, Padhye S, Kulkarni S, Li Y (2006). The role of genistein and synthetic derivatives of isoflavone in cancer prevention and therapy. Mini Rev Med Chem. 6(4): 401-7.
https://doi.org/10.2174/138955706776361439
PMid:16613577
 
Schuster S, Dandekar T, Fell DA (1999). Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering. Trends Biotechnol 17: 53-60.
https://doi.org/10.1016/S0167-7799(98)01290-6
 
Shashank Kumar and Abhay K Pandey (2013). Chemistry and Biological Activities of Flavonoids: An Overview. The Scientific World Journal 162750. Doi:10.1155/2013/162750
https://doi.org/10.1155/2013/162750
PMid:24470791 PMCid:PMC3891543
 
Spaink HP (2000). Root nodulation and infection factors produced by rhizobial bacteria. Annu Rev Microbiol 54: 257-288.
https://doi.org/10.1146/annurev.micro.54.1.257
PMid:11018130
 
Stacey G, Libault M, Brechenmacher L, Wan J, May GD (2006). Genetics and functional genomics of legume nodulation. Curr Opin Plant Biol 9: 110-121.
https://doi.org/10.1016/j.pbi.2006.01.005
PMid:16458572
 
Stephen Bent (2008). Herbal Medicine in the United States: Review of Efficacy, Safety, and Regulation. J Gen Intern Med 23(6): 854-9.
https://doi.org/10.1007/s11606-008-0632-y
PMid:18415652 PMCid:PMC2517879
 
Tapken D, Hollmann M. (2008). Arabidopsis thaliana glutamate receptor ion channel function demonstrated by ion pore transplantation. J Mol Biol 383:36-48.
https://doi.org/10.1016/j.jmb.2008.06.076
PMid:18625242
 
The Arabidopsis Genome Initiative. (2000). Analysis of the genome sequence of the flowering plant Arabidopsis thaliana, Nature 408 (6814): 796-815.
https://doi.org/10.1038/35048692
PMid:11130711
 
Tracing Similarities And Differences In Our DNA, https://www.koshland-science-museum.org/sites/all/exhibits/exhibitdna/intro03.jsp accessed on 2/29/2016
 
Vandenberg L N, Colborn T, Hayes T B, Heindel J J, Jacobs D R., Lee DH, et al. (2012). Hormones and Endocrine-Disrupting Chemicals: Low-Dose Effects and Nonmonotonic Dose Responses. Endocrine Reviews 33(3): 378-455. Http://doi.org/10.1210/er.2011-1050
https://doi.org/10.1210/er.2011-1050
PMid:22419778 PMCid:PMC3365860
 
Vander AJ (1970). Energy and Cellular Metabolism, Human Physiology. NY: mcgraw-Hill Book Company, 413.
 
Walch-Liu P, Liu LH, Remans T, Tester M, Forde BG. (2006). Evidence that L-glutamate can act as an endogenous signal to modulate root growth and branching in Arabidopsis thaliana. Plant Cell Physiol 47:1045-57.
https://doi.org/10.1093/pcp/pcj075
PMid:16816406
 
War A R, Paulraj M G, Ahmad T, Buhroo A A, Hussain B, Ignacimuthu S, et al. (2012). Mechanisms of plant defense against insect herbivores. Plant Signaling & Behavior 7(10): 1306-1320. Http://doi.org/10.4161/psb.21663
https://doi.org/10.4161/psb.21663
PMid:22895106 PMCid:PMC3493419
 
Zhao Q, Kurata H (2009). Genetic modification of flux for flux prediction of mutants. Bioinformatics 25: 1702-1708.
https://doi.org/10.1093/bioinformatics/btp298
PMid:19468056
 
Zheng H, Kunst L, Hawes C, Moore I. (2004). A GFP-based assay reveals a role for RHD3 in transport between the endoplasmic reticulum and Golgi apparatus. Plant J 37:398-414.
https://doi.org/10.1046/j.1365-313X.2003.01969.x
PMid:14731265
 
Zhu PP, Soderblom C, Tao-Cheng JH, Stadler J, Blackstone C. (2006). SPG3A protein atlastin-1 is enriched in growth cones and promotes axon elongation during neuronal development. Hum Mol Genet 15:1343-53.
https://doi.org/10.1093/hmg/ddl054
PMid:16537571

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