Microbial Bioactives
Microbial Bioactives | Online ISSN 2209-2161
362
Citations
208.1k
Views
181
Articles
REVIEWS (Open Access)
Thermal Frontiers: Synthesizing Microbial Diversity, Function, and Evolution in Hot Spring Ecosystems
Mohammad Moniruzzaman 1,2*, Md. Mahmuduzzaman Mian 3*
Microbial Bioactives 5 (2) 1-8 https://doi.org/10.25163/microbbioacts.5210706
Submitted: 11 August 2022 Revised: 01 October 2022 Accepted: 09 October 2022 Published: 11 October 2022
Abstract
Hot springs are extreme ecosystems where life thrives under high temperatures, unique geochemistries, and evolutionary constraints. These habitats serve as natural laboratories for studying microbial diversity, adaptation, and ecosystem functioning. Historically, microbial research in hot springs relied on culture-dependent methods, which captured only a small fraction of extant microbial diversity. The advent of molecular approaches, particularly 16S rRNA gene sequencing, metagenomics, and single-cell genomics, has revealed unprecedented diversity, including previously unknown archaeal and bacterial lineages. Comparative analyses across global hot springs indicate that microbial community composition is influenced not only by temperature but also by pH, mineral content, and geographical isolation. Functional gene analyses show metabolic versatility, including thermophilic phototrophy, heterotrophy, and chemolithotrophy, emphasizing the ecological roles of these microbes. Viral and mobile genetic elements further shape community dynamics and drive genomic innovation. Collectively, these studies demonstrate that hot springs are evolutionary crucibles where microbes exhibit remarkable physiological and genetic adaptations. Understanding these communities provides insights into the limits of life on Earth, potential biotechnological applications, and analogs for extraterrestrial habitats. This systematic synthesis integrates ecological, functional, and evolutionary perspectives to highlight the complexity, resilience, and innovation inherent in thermal microbial ecosystems.
Keywords: Hot springs, Thermophiles, Microbial diversity, Metagenomics, 16S rRNA, Functional genes, Evolutionary adaptation, Extreme environments
References
Amann, R. I., Ludwig, W., & Schleifer, K. H. (1995). Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiological Reviews, 59(1), 143–169. https://doi.org/10.1128/mmbr.59.1.143-169.1995
Anantharaman, K., Breier, J. A., Sheik, C. S., & Dick, G. J. (2013). Evidence for hydrogen oxidation and metabolic plasticity in deep-sea sulfur-oxidizing bacteria. Proceedings of the National Academy of Sciences, 110(1), 330–335. https://doi.org/10.1073/pnas.1215653110
Atanassov, I., Dimitrova, D., Stefanova, K., et al. (2010). Molecular characterization of the archaeal diversity in Vlasa hot spring, Bulgaria. Biotechnology & Biotechnological Equipment, 24(2), 1979–1985. https://doi.org/10.2478/V10133-010-0010-3
Barns, S. M., Delwiche, C. F., Palmer, J. D., & Pace, N. R. (1996). Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proceedings of the National Academy of Sciences, 93(17), 9188–9193. https://doi.org/10.1073/pnas.93.17.9188
Barns, S. M., Fundyga, R. E., Jeffries, M. W., & Pace, N. R. (1994). Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment. Proceedings of the National Academy of Sciences, 91(5), 1609–1613. https://doi.org/10.1073/pnas.91.5.1609
Bryant, D. A., Costas, A. M., Maresca, J. A., et al. (2007). Candidatus Chloracidobacterium thermophilum: An aerobic phototrophic acidobacterium. Science, 317(5837), 523–526. https://doi.org/10.1126/science.1143236
Chien, A., Edgar, D. B., & Trela, J. M. (1976). Deoxyribonucleic acid polymerase from the extreme thermophile Thermus aquaticus. Journal of Bacteriology, 127(3), 1550–1557. https://doi.org/10.1128/jb.127.3.1550-1557.1976
Ghosh, D., Bal, B., Kashyap, V. K., & Pal, S. (2003). Molecular phylogenetic exploration of bacterial diversity in a Bakreshwar (India) hot spring. Applied and Environmental Microbiology, 69(7), 4332–4336. https://doi.org/10.1128/AEM.69.7.4332-4336.2003
Heidelberg, J. F., Nelson, W. C., Schoenfeld, T., & Bhaya, D. (2009). Germ warfare in a microbial mat community: CRISPRs provide insights into co-evolution. PLoS One, 4(1), e4169. https://doi.org/10.1371/journal.pone.0004169
Hobel, C. F. V., Marteinsson, V. T., Hreggvidsson, G. O., & Kristjansson, J. K. (2005). Investigation of the microbial ecology of intertidal hot springs by using diversity analysis of 16S rRNA and chitinase genes. Applied and Environmental Microbiology, 71(5), 2771–2776. https://doi.org/10.1128/AEM.71.5.2771-2776.2005
Huber, H., Hohn, M. J., Rachel, R., Fuchs, T., Wimmer, V. C., & Stetter, K. O. (2002). A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont. Nature, 417(6884), 63–67. https://doi.org/10.1038/417063a
Jiménez, D. J., Andreote, F. D., Chaves, D., et al. (2012). Structural and functional insights from the metagenome of an acidic hot spring microbial planktonic community. PLoS One, 7(12), e52069. https://doi.org/10.1371/journal.pone.0052069
Kanokratana, P., Chanapan, S., Pootanakit, K., & Eurwilaichitr, L. (2004). Diversity and abundance of bacteria and archaea in the Bor Khlueng hot spring in Thailand. Journal of Basic Microbiology, 44(6), 430–444. https://doi.org/10.1002/jobm.200410425
Klatt, C. G., Wood, J. M., Rusch, D. B., et al. (2011). Community ecology of hot spring cyanobacterial mats. The ISME Journal, 5(8), 1262–1278. https://doi.org/10.1038/ismej.2011.8
Liu, Z., Klatt, C. G., Ludwig, M., et al. (2012). Candidatus Thermochlorobacter aerophilum: An aerobic chlorophotoheterotrophic member of the phylum Chlorobi. The ISME Journal, 6(10), 1869–1882. https://doi.org/10.1038/ismej.2012.24
Liu, Z., Klatt, C. G., Wood, J. M., et al. (2011). Metatranscriptomic analyses of chlorophototrophs of a hot-spring microbial mat. The ISME Journal, 5(8), 1279–1290. https://doi.org/10.1038/ismej.2011.9
López-López, O., Cerdán, M. E., & González-Siso, M. I. (2013). Hot spring metagenomics. Life, 3(2), 308–320. https://doi.org/10.3390/life3020308
Mardanov, A. V., Gumerov, V. M., Beletsky, A. V., et al. (2011). Uncultured archaea dominate in the thermal groundwater of Uzon Caldera, Kamchatka. Extremophiles, 15(3), 365–372. https://doi.org/10.1007/s00792-011-0366-4
Marsh, C. L., & Larsen, D. H. (1953). Characterization of some thermophilic bacteria from the hot springs of Yellowstone National Park. Journal of Bacteriology, 65(2), 193–197. https://doi.org/10.1128/jb.65.2.193-197.1953
Meyer-Dombard, D. R., Shock, E. L., & Amend, J. P. (2005). Archaeal and bacterial communities in geochemically diverse hot springs of Yellowstone National Park, USA. Geobiology, 3(3), 211–227. https://doi.org/10.1111/j.1472-4669.2005.00052.x
Miller, S. R., Strong, A. L., Jones, K. L., & Ungerer, M. C. (2009). Bar-coded pyrosequencing reveals shared bacterial community properties along the temperature gradients of two alkaline hot springs in Yellowstone National Park. Applied and Environmental Microbiology, 75(13), 4565–4572. https://doi.org/10.1128/AEM.00192-09
Nelson, W. C., Wollerman, L., Bhaya, D., & Heidelberg, J. F. (2011). Analysis of insertion sequences in thermophilic cyanobacteria. Applied and Environmental Microbiology, 77(15), 5458–5466. https://doi.org/10.1128/AEM.00201-11
Papke, R. T., Ramsing, N. B., Bateson, M. M., & Ward, D. M. (2003). Geographical isolation in hot spring cyanobacteria. Environmental Microbiology, 5(8), 650–659. https://doi.org/10.1046/j.1462-2920.2003.00451.x
Schoenfeld, T., Patterson, M., Richardson, P. M., et al. (2008). Assembly of viral metagenomes from Yellowstone hot springs. Applied and Environmental Microbiology, 74(13), 4164–4174. https://doi.org/10.1128/AEM.02562-07
Servín-Garcidueñas, L. E., Peng, X., Garrett, R. A., & Martínez-Romero, E. (2013). Genome sequence of a novel archaeal rudivirus recovered from a Mexican hot spring. Genome Announcements, 1(2), e00040-13. https://doi.org/10.1128/genomeA.00040-13
Shah, N., Tang, H., Doak, T. G., & Ye, Y. (2011). Comparing bacterial communities inferred from 16S rRNA gene sequencing and shotgun metagenomics. Pacific Symposium on Biocomputing, 165–176. https://doi.org/10.1142/9789814335058_0018
Tekere, M., Lötter, A., Olivier, J., Jonker, N., & Venter, S. (2011). Metagenomic analysis of bacterial diversity of Siloam hot water spring, Limpopo, South Africa. African Journal of Biotechnology, 10(78), 18005–18012. https://doi.org/10.5897/AJB10.126
Tindall, B. J., Rosselló-Móra, R., Busse, H.-J., et al. (2010). Notes on the characterization of prokaryote strains for taxonomic purposes. International Journal of Systematic and Evolutionary Microbiology, 60(1), 249–266. https://doi.org/10.1099/ijs.0.016949-0
Valverde, A., Tuffin, M., & Cowan, D. A. (2012). Biogeography of bacterial communities in hot springs: A focus on the actinobacteria. Extremophiles, 16(4), 669–679. https://doi.org/10.1007/s00792-012-0465-0
Ward, D. M., Cohan, F. M., Bhaya, D., et al. (2008). Genomics, environmental genomics and the issue of microbial species. Heredity, 100(2), 207–219. https://doi.org/10.1038/sj.hdy.6801073
Recommended articles
Microbial Frontiers in Extreme Environments: Rethinking Bioactive Potential Across Marine and Pristine Ecosystems
Marine Microbial Metabolites as Bioactive Reservoirs: A Systematic Synthesis of Biosynthetic Diversity and Functional Potential
Illuminating Biological Dark Matter: Integrating Metagenomics, Synthetic Biology, and AI to Unlock Microbial and Genomic Potential for Therapeutics and Biotechnology
Article metrics
View details
0
Downloads
0
Citations
18
Views
0
Save
Save
0
Citation
Citation
18
View
View
0
Share
Share