Angiogenesis, Inflammation & Therapeutics | Online ISSN  2207-872X
RESEARCH ARTICLE   (Open Access)

Artificial Intelligence in Cancer Research: Predictive Modeling of Angiogenesis and Biomarker Discovery

Veera V Rama Rao M1*, Savitha. S2, Kumar Akuthota3, Pathan Firoze Khan4, Navyatha R5, Srithar S6

+ Author Affiliations

Journal of Angiotherapy 8 (10) 1-8 https://doi.org/10.25163/angiotherapy.889975

Submitted: 13 August 2024 Revised: 13 October 2024  Published: 16 October 2024 


Abstract

Background: The integration of Artificial Intelligence (AI) in cancer research has dramatically enhanced the study, diagnosis, and treatment of cancer. AI’s advanced algorithms, especially recurrent neural networks (RNNs), have proven effective in analyzing complex datasets, facilitating novel biomarker discovery, and improving cancer diagnostics and prognostics. Angiogenesis, the process of new blood vessel formation, plays a crucial role in tumor growth and metastasis, making it a promising target for therapeutic strategies. This study explores the use of AI to identify angiogenesis-related biomarkers and develop personalized treatment strategies. Methods: This study utilized a large dataset from The Cancer Genome Atlas (TCGA), encompassing over 20,000 primary tumor and normal samples across 33 cancer types. Preprocessing techniques such as data cleaning, normalization, and outlier detection were applied. Dimensionality reduction through Principal Component Analysis (PCA) and data visualization using t-Distributed Stochastic Neighbor Embedding (t-SNE) were employed. A Recurrent Neural Network (RNN) was chosen to analyze the sequential biological data and identify potential biomarkers related to angiogenesis. Results: The AI model demonstrated excellent performance across multiple evaluation metrics, including accuracy (0.85), precision (0.82), recall (0.88), F1-score (0.85), and AUC-ROC (0.92), highlighting its effectiveness in predicting cancer progression and identifying key biomarkers. The RNN model was particularly adept at identifying complex patterns in angiogenesis data, facilitating a deeper understanding of tumor biology and revealing novel therapeutic targets. Conclusion: The results underscore the significant potential of AI, specifically RNNs, in advancing cancer research and personalized treatment planning. AI-driven insights into angiogenesis-related biomarkers enable targeted therapies, offering new avenues for effective cancer treatment. These findings not only improve cancer diagnosis and prognosis but also emphasize the role of AI in developing precision oncology approaches, enhancing patient outcomes, and guiding future research in cancer therapeutics.

Keywords: Artificial Intelligence, Cancer Research, Angiogenesis, Biomarker Discovery, Recurrent Neural Networks

References


Bera, K., Braman, N., Gupta, A., Velcheti, V., & Madabhushi, A. (2022). Predicting cancer outcomes with radiomics and artificial intelligence in radiology. Nature Reviews Clinical Oncology, 19(2), 132-146. https://doi.org/10.1038/s41571-021-00560-7

Bhinder, B., Gilvary, C., Madhukar, N. S., & Elemento, O. (2021). Artificial intelligence in cancer research and precision medicine. Cancer Discovery, 11(4), 900-915. https://doi.org/10.1158/2159-8290.CD-21-0090

Chiu, F. Y., & Yen, Y. (2023). Imaging biomarkers for clinical applications in neuro-oncology: Current status and future perspectives. Biomarker Research, 11(1), 35. https://doi.org/10.1186/s40364-023-00476-7

Cignarella, A., Fadini, G. P., Bolego, C., Trevisi, L., Boscaro, C., Sanga, V., ... & Barton, M. (2022). Clinical efficacy and safety of angiogenesis inhibitors: Sex differences and current challenges. Cardiovascular Research, 118(4), 988-1003. https://doi.org/10.1093/cvr/cvab096

Elemento, O., Leslie, C., Lundin, J., & Tourassi, G. (2021). Artificial intelligence in cancer research, diagnosis, and therapy. Nature Reviews Cancer, 21(12), 747-752. https://doi.org/10.1038/s41568-021-00399-1

Elemento, O., Leslie, C., Lundin, J., & Tourassi, G. (2021). Artificial intelligence in cancer research, diagnosis, and therapy. Nature Reviews Cancer, 21(12), 747-752. https://doi.org/10.1038/s41568-021-00399-1

Ettyem, S. A., Ahmed, I., Ahmed, W. S., Hussien, N. A., Majeed, M. G., Cengiz, K., & Benameur, N. (2023). Intelligent wireless sensor networks for healthcare: Bridging biomedical clothing to the IoT future. Journal of Intelligent Systems & Internet of Things, 9(2). https://doi.org/10.54216/JISIoT.090203

Kumar, Y., Koul, A., Singla, R., & Ijaz, M. F. (2023). Artificial intelligence in disease diagnosis: A systematic literature review, synthesizing framework, and future research agenda. Journal of Ambient Intelligence and Humanized Computing, 14(7), 8459-8486. https://doi.org/10.1007/s12652-021-03612-z

Liu, Z. L., Chen, H. H., Zheng, L. L., Sun, L. P., & Shi, L. (2023). Angiogenic signaling pathways and anti-angiogenic therapy for cancer. Signal Transduction and Targeted Therapy, 8(1), 198. https://doi.org/10.1038/s41392-023-01460-1

Lopes-Coelho, F., Martins, F., Pereira, S. A., & Serpa, J. (2021). Anti-angiogenic therapy: Current challenges and future perspectives. International Journal of Molecular Sciences, 22(7), 3765. https://doi.org/10.3390/ijms22073765

Ma, J., Yang, J., Jin, Y., Cheng, S., Huang, S., Zhang, N., & Wang, Y. (2021). Artificial intelligence based on blood biomarkers including CTCs predicts outcomes in epithelial ovarian cancer: A prospective study. OncoTargets and Therapy, 3267-3280.

Ma, L., & Sun, B. (2020). Machine learning and AI in marketing: Connecting computing power to human insights. International Journal of Research in Marketing, 37(3), 481-504. https://doi.org/10.1016/j.ijresmar.2020.04.005

Mann, M., Kumar, C., Zeng, W. F., & Strauss, M. T. (2021). Artificial intelligence for proteomics and biomarker discovery. Cell Systems, 12(8), 759-770. https://doi.org/10.1016/j.cels.2021.06.006

Mansur, A., Vrionis, A., Charles, J. P., Hancel, K., Panagides, J. C., Moloudi, F., ... & Daye, D. (2023). The role of artificial intelligence in the detection and implementation of biomarkers for hepatocellular carcinoma: Outlook and opportunities. Cancers, 15(11), 2928. https://doi.org/10.3390/cancers15112928

Marias, K. (2021). The constantly evolving role of medical image processing in oncology: From traditional medical image processing to imaging biomarkers and radiomics. Journal of Imaging, 7(8), 124. https://doi.org/10.3390/jimaging7080124

Oguntade, A. S., Al-Amodi, F., Alrumayh, A., Alobaida, M., & Bwalya, M. (2021). Anti-angiogenesis in cancer therapeutics: The magic bullet. Journal of the Egyptian National Cancer Institute, 33(1), 1-11. https://doi.org/10.1186/s43046-021-00072-6

Orsini, A., Diquigiovanni, C., & Bonora, E. (2023). Omics technologies improving breast cancer research and diagnostics. International Journal of Molecular Sciences, 24(16), 12690. https://doi.org/10.3390/ijms241612690

Prelaj, A., Miskovic, V., Zanitti, M., Trovo, F., Genova, C., Viscardi, G., ... & Pedrocchi, A. L. G. (2023). Artificial intelligence for predictive biomarker discovery in immuno-oncology: A systematic review. Annals of Oncology. https://doi.org/10.1016/j.annonc.2023.10.125

Pun, F. W., Ozerov, I. V., & Zhavoronkov, A. (2023). AI-powered therapeutic target discovery. Trends in Pharmacological Sciences. https://doi.org/10.1016/j.tips.2023.06.010

Sabra, M., Karbasiafshar, C., Aboulgheit, A., Raj, S., Abid, M. R., & Sellke, F. W. (2021). Clinical application of novel therapies for coronary angiogenesis: Overview, challenges, and prospects. International Journal of Molecular Sciences, 22(7), 3722. https://doi.org/10.3390/ijms22073722

Shah, S. M., Khan, R. A., Arif, S., & Sajid, U. (2022). Artificial intelligence for breast cancer analysis: Trends & directions. Computers in Biology and Medicine, 142, 105221. https://doi.org/10.1016/j.compbiomed.2022.105221

Sherani, A. M. K., Khan, M., Qayyum, M. U., & Hussain, H. K. (2024). Synergizing AI and healthcare: Pioneering advances in cancer medicine for personalized treatment. International Journal of Multidisciplinary Sciences and Arts, 3(1), 270-277. https://doi.org/10.47709/ijmdsa.v3i01.3562

Shiwlani, A., Khan, M., Sherani, A. M. K., & Qayyum, M. U. (2023). Synergies of AI and smart technology: Revolutionizing cancer medicine, vaccine development, and patient care. International Journal of Social, Humanities and Life Sciences, 1(1), 10-18.

Sun, X., Ni, N., Ma, Y., Wang, Y., & Leong, D. T. (2020). Retooling cancer nanotherapeutics’ entry into tumors to alleviate tumoral hypoxia. Small, 16(41), 2003000. https://doi.org/10.1002/smll.202003000

Tao, D., Wang, Y., Zhang, X., Wang, C., Yang, D., Chen, J., ... & Zhang, N. (2022). Identification of angiogenesis-related prognostic biomarkers associated with immune cell infiltration in breast cancer. Frontiers in Cell and Developmental Biology, 10, 853324. https://doi.org/10.3389/fcell.2022.853324

Wang, X., He, Y., Mackowiak, B., & Gao, B. (2021). MicroRNAs as regulators, biomarkers, and therapeutic targets in liver diseases. Gut, 70(4), 784-795. https://doi.org/10.1136/gutjnl-2020-322526

Zam, W., Ahmed, I., & Yousef, H. (2021). The Warburg effect on cancer cells survival: The role of sugar starvation in cancer therapy. Current Reviews in Clinical and Experimental Pharmacology, 16(1), 30-38. https://doi.org/10.2174/1574884715666200413121756

Zarychta, E., & Ruszkowska-Ciastek, B. (2022). Cooperation between angiogenesis, vasculogenesis, chemotaxis, and coagulation in breast cancer metastases development: Pathophysiological point of view. Biomedicines, 10(2), 300. https://doi.org/10.3390/biomedicines10020300

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