References
AboNahas, H. H., Darwish, A. M., Abd El-kareem, H. F., AboNahas, Y. H., Mansour, S. A., Korra, Y. H., et al. (2022). “Trust Your Gut: The Human Gut Microbiome in Health and Disease,” in Microbiome-Gut-Brain Axis, eds R. Z. Sayyed and M. Khan (Singapore: Springer), 53–96.
Afanas’ev, I. (2014). New nucleophilic mechanisms of ros-dependent epigenetic modifications: Comparison of aging and cancer. Aging Dis. 5:52.
Ahlawat, S., and Sharma, K. K. (2021). Gut–organ axis: A microbial outreach and networking. Lett. Appl. Microbiol. 72, 636–668.
Arpaia, N., Campbell, C., Fan, X., Dikiy, S., van der Veeken, J., deRoos, P., ... & Rudensky, A. Y. (2013). Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation. Nature, 504(7480), 451-455.
Arrieta, M. C., Stiemsma, L. T., Amenyogbe, N., Brown, E. M., & Finlay, B. (2014). The intestinal microbiome in early life: health and disease. Frontiers in Immunology, 5, 427.
Arumugam, M., Raes, J., Pelletier, E., Le Paslier, D., Yamada, T., Mende, D. R., … & Tap, J. (2011). Enterotypes of the human gut microbiome. Nature, 473(7346), 174-180.Tilg, H., Zmora, N., Adolph, T. E., & Elinav, E. (2020). The intestinal microbiota fuelling metabolic inflammation. Nature Reviews Immunology, 20(1), 40-54.
Belizário, J. E., et al. (2015). Gut microbiota: The brain peacekeeper. Frontiers in Microbiology, 6, 1523.S
Berg G.; Rybakova D.; Fischer D.; Cernava T.; Verges M. C.; Charles T.; Chen X.; Cocolin L.; Eversole K.; Corral G. H.; et al. Microbiome Definition Re-Visited: Old Concepts and New Challenges. Microbiome 2020, 8, 103. 10.1186/s40168-020-00875-0.
Cammarota, G., Ianiro, G., Tilg, H., Rajilic-Stojanovic, M., Kump, P., Satokari, R., … & Sokol, H. (2017). European consensus conference on faecal microbiota transplantation in clinical practice. Gut, 66(4), 569-580
Carding, S., Verbeke, K., Vipond, D. T., Corfe, B. M., & Owen, L. J. (2015). Dysbiosis of the gut microbiota in disease. Microbial Ecology in Health and Disease, 26(1), 26191.
Cho, I., & Blaser, M. J. (2012). The human microbiome: at the interface of health and disease. Nature Reviews Genetics, 13(4), 260-270.
Clemente, J. C., Ursell, L. K., Parfrey, L. W., & Knight, R. (2012). The impact of the gut microbiota on human health: an integrative view. Cell, 148(6), 1258-1270.
Cryan, J. F., & Dinan, T. G. (2012). Mind-altering microorganisms: the impact of the gut microbiota on brain and behaviour. Nature Reviews Neuroscience, 13(10), 701-712
David, L. A., Maurice, C. F., Carmody, R. N., Gootenberg, D. B., Button, J. E., Wolfe, B. E., … & Turnbaugh, P. J. (2014). Diet rapidly and reproducibly alters the human gut microbiome. Nature, 505(7484), 559-563
Dinan, T. G., & Cryan, J. F. (2017). The Microbiome-Gut-Brain Axis in Health and Disease. Gastroenterology Clinics of North America, 46(1), 77-89.
egre, J. A., & Wu, J. (2009). Microbial ecology: Seeing the forest for the trees. Nature, 457(7228), 143-144.
Franzosa, E. A., Huang, K., Meadow, J. F., Gevers, D., Lemon, K. P., Bohannan, B. J., … & Huttenhower, C. (2015). Identifying personal microbiomes using metagenomic codes. Proceedings of the National Academy of Sciences, 112(22), E2930-E2938.
Goodrich, J. K., Waters, J. L., Poole, A. C., Sutter, J. L., Koren, O., Blekhman, R., … & Ley, R. E. (2014). Human genetics shape the gut microbiome. Cell, 159(4), 789-799.
Guigoz Y.; Dore J.; Schiffrin E. J. The Inflammatory Status of Old Age Can Be Nurtured from the Intestinal Environment. Curr. Opin. Clin. Nutr. Metab. Care 2008, 11, 13–20. 10.1097/MCO.0b013e3282f2bfdf.
Honda, K., & Littman, D. R. (2016). The microbiota in adaptive immune homeostasis and disease. Nature, 535(7610), 75-84.
Khoruts, A., & Sadowsky, M. J. (2016). Therapeutic transplantation of the distal gut microbiota. Mucosal Immunology, 9(1), 55-59.
Kim S. A.; Kim B. R.; Chun M. Y.; Youn S. W. Relation between Ph in the Trunk and Face: Truncal Ph Can Be Easily Predicted from Facial Ph. Ann. Dermatol. 2016, 28, 216–221. 10.5021/ad.2016.28.2.216
Lloyd-Price, J., Abu-Ali, G., & Huttenhower, C. (2016). The healthy human microbiome. Genome Medicine, 8(1),
Lloyd-Price, J., Mahurkar, A., Rahnavard, G., Crabtree, J., Orvis, J., Hall, A. B., … & Huttenhower, C. (2019). Strains, functions and dynamics in the expanded Human Microbiome Project. Nature, 550(7674), 61-66.
Lozupone, C. A., Stombaugh, J. I., Gordon, J. I., Jansson, J. K., & Knight, R. (2012). Diversity, stability, and resilience of the human gut microbiota. Nature, 489(7415), 220-230.
Lynch, S. V., & Pedersen, O. (2016). The Human Intestinal Microbiome in Health and Disease. New England Journal of Medicine, 375(24), 2369-2379.
Lynch, S. V., & Pedersen, O. (2016). The human intestinal microbiome in health and disease. New England Journal of Medicine, 375(24), 2369-2379.
Marchesi, J. R., Adams, D. H., Fava, F., Hermes, G. D., Hirschfield, G. M., Hold, G., … & Sorek, R. (2016). The gut microbiota and host health: a new clinical frontier. Gut, 65(2), 330-339.
Paramsothy, S., Kamm, M. A., & Kaakoush, N. O. (2018). Beneficial changes in fecal microbiota and metabolome are associated with enhanced immunity and reduced recurrence following FMT in Clostridioides difficile infection. European Journal of Gastroenterology & Hepatology, 30(10), 1076-1086.
Proctor, L. M. (2011). The human microbiome project in 2011 and beyond. Cell Host & Microbe, 10(4), 287-291
Qin, J., Li, R., Raes, J., Arumugam, M., Burgdorf, K. S., Manichanh, C., … & Wang, J. (2010). A human gut microbial gene catalogue established by metagenomic sequencing. Nature, 464(7285), 59-65.
Rinninella, E., Raoul, P., Cintoni, M., Franceschi, F., Miggiano, G. A. D., Gasbarrini, A., & Mele, M. C. (2019). What is the healthy gut microbiota composition? A changing ecosystem across age, environment, diet, and diseases. Microorganisms, 7(1), 14.
Rinninella, E., Raoul, P., Cintoni, M., Franceschi, F., Miggiano, G. A. D., Gasbarrini, A., & Mele, M. C. (2019). What is the healthy gut microbiota composition? A changing ecosystem across age, environment, diet, and diseases. Microorganisms, 7(1), 14.
Rook, G. A., et al. (2013). Microbiota as an environmental immunogen: impact on tolerance and autoimmunity. Current Opinion in Immunology, 25(6), 378-385.
Round, J. L., & Mazmanian, S. K. (2009). The gut microbiota shapes intestinal immune responses during health and disease. Nature Reviews Immunology, 9(5), 313-323.
Sartor, R. B. (2008). Microbial influences in inflammatory bowel diseases. Gastroenterology, 134(2), 577-594.
Scott, K. P., Gratz, S. W., Sheridan, P. O., Flint, H. J., & Duncan, S. H. (2013). The influence of diet on the gut microbiota. Pharmacological Research, 69(1), 52-60.
Sender, R., Fuchs, S., & Milo, R. (2016). Revised estimates for the number of human and bacteria cells in the body. PLOS Biology, 14(8), e1002533.
Shanahan, F. (2012). A commentary on the safety of probiotics. Gastroenterology, 143(5), 1082-1083.
Shi, Y., et al. (2021). Personalized Manipulation of the Gut Microbiome as a Potential Strategy to Ameliorate Gastrointestinal and Systemic Immune-Mediated Diseases. Frontiers in Medicine, 8, 611997.
Shreiner, A. B., Kao, J. Y., & Young, V. B. (2015). The gut microbiome in health and in disease. Current Opinion in Gastroenterology, 31(1), 69-75.
Sonnenburg, J. L., & Sonnenburg, E. D. (2019). The ancestral and industrialized gut microbiota and implications for human health. Nature Reviews Microbiology, 17(6), 383-390.
Tremaroli, V., & Bäckhed, F. (2012). Functional interactions between the gut microbiota and host metabolism. Nature, 489(7415), 242-249.
Turnbaugh, P. J., Ley, R. E., Mahowald, M. A., Magrini, V., Mardis, E. R., & Gordon, J. I. (2007). An obesity-associated gut microbiome with increased capacity for energy harvest. Nature, 444(7122), 1027-1031.
Turnbaugh, P. J., Ley, R. E., Mahowald, M. A., Magrini, V., Mardis, E. R., & Gordon, J. I. (2006). An obesity-associated gut microbiome with increased capacity for energy harvest. Nature, 444(7122), 1027-1031.
Vaghef-Mehrabany, E., Alipour, B., Homayouni-Rad, A., Sharif, S. K., Asghari-Jafarabadi, M., Zavvari, S., ... & Alizadeh, M. (2014). Probiotic supplementation improves inflammatory status in patients with rheumatoid arthritis. Nutrition, 30(4), 430-435.
Wu, G. D., Chen, J., Hoffmann, C., Bittinger, K., Chen, Y. Y., Keilbaugh, S. A., … & Lewis, J. D. (2011). Linking long-term dietary patterns with gut microbial enterotypes. Science, 334(6052), 105-108.
Wu, H. J., & Wu, E. (2012). The role of gut microbiota in immune homeostasis and autoimmunity. Gut Microbes, 3(1), 4-14.
Yatsunenko T.; Rey F. E.; Manary M. J.; Trehan I.; Dominguez-Bello M. G.; Contreras M.; Magris M.; Hidalgo G.; Baldassano R. N.; Anokhin A. P.; et al. Human Gut Microbiome Viewed across Age and Geography. Nature 2012, 486, 222–227. 10.1038/nature11053.